Submitted – accepted – in press
|
Uthanumallian K., Del Cortona A., Coelho S. De Clerck O., Duchene S. & Verbruggen H. Genome-wide patterns of selection-drift variation strongly associate with organismal traits across the green algae. Genome Research: in press DOI: 10.1101/gr.279002.124 |
|
Verbruggen H., Uthanumallian K., Powrie F., Jalali T., Cremen C., Preuss M., Duchene S. & Diaz-Tapia P. Scaling up species delimitation from DNA barcodes to whole organelle genomes: strong evidence for discordance among genes and methods for the red alga Dasyclonium. Submitted |
|
Bjornson S., Verbruggen H., Upham N., & Steenwyk J. Reticulate evolution: Detection and utility in the phylogenomics era. Submitted Preprint: 10.20944/preprints202309.0905.v2 |
|
Turnbull R., Steenwyk J., Mutch S.J., Scholten P., Salazar V.W., Birch J. & Verbruggen H. OrthoFlow: phylogenomic analysis and diagnostics with one command. Submitted Preprint: ResearchSquare |
|
Terpis K., Salomaki E., Barcyte D., Panek T., Verbruggen H., Kolisko M., Bailey J.C., Elias M, & Lane C. Multiple plastid losses within photosynthetic stramenopiles revealed by comprehensive phylogenomics. Submitted Preprint: bioRxiv |
|
Denoeud F., Godfroy O., Cruaud C., Heesch S., Nehr Z., Tadrent N., Couloux A., Brillet-Gueguen L., Delage L., Mckeown D., Motomura T., Sussfeld D., Fan X., Mazeas L., Terrapon N., Barrera-Redondo J., Petroll R., Reynes L., Choi S.W., Jo J., Uthanumallian K., Bogaert K., Duc C., Ratchinski P., Lipinska A., Noel B., Murphy E.A., Lohr M., Khatei A., Hamon-Giraud P., Vieira C., Akerfors S.S., Akita S., Avia K., Badis Y., Barbeyron T., Belcour A., Berrabah W., Blanquart S., Bouguerba-Collin A., Bringloe T., Cattolico R.A., Cormier A., Cruz de Carvalho H., Dallet R., De Clerck O., Debit A., Denis E., Destombe C., Dinatale E., Dittami S., Drula E., Faugeron S., Got J., Graf L., Groisillier A., Guillemin M.L., Harms L., Hatchett W.J., Henrissat B., Hoarau G., Jollivet C., Jueterbock A., Kayal E., Knoll A.H., Kogame K., Le Bars A., Leblanc C., Le Gall L., Ley R., Liu X., LoDuca S.L., Lopez P.J., Lopez P., Manirakiza E., Massau K., Mauger S., Mest L., Michel G., Monteiro C., Nagasato C., Negre D., Pelletier E., Phillips N., Potin P., Rensing S.A., Rousselot E., Rousvoal S., Schroeder D., Scornet D., Siegel A., Tirichine L., Tonon T., Valentin K., Verbruggen H., Weinberger F., Wheeler G., Kawai H., Peters A.F., Yoon H.S., Herve C., Ye N., Bapteste E., Valero M., Markov G.V., Corre E., Coelho S.M., Wincker P., Aury J.M. & Cock J.M. Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Cell: accepted Preprint: bioRxiv |
|
Hossen R., Courtney M., Sim A., Khan M.A.A.K., Verbruggen H. & Bringloe T. An optimized CTAB method for genomic DNA extraction from green algae. Submitted |
|
Tandon K., Hu J., Pasella M.M., Pushpakumara B.L.D.U. & Verbruggen H. Coral skeleton dwelling endolithic algae: Ostreobium and its biology. Submitted |
2024
|
Assis J., Fernández Bejarano S.J., Salazar V.W., Schepers L., Gouvea L., Fragkopoulou E., Leclercq F., Vanhoorne B., Tyberghein L., Serrao E.A., Verbruggen H. & De Clerck O. (2024) Bio-ORACLE v3.0. Pushing marine data layers to the CMIP6 Earth system models of climate change research Global Ecology and Biogeography 33: e13813 DOI: 10.1111/geb.13813 |
|
Diaz-Tapia P. & Verbruggen H. (2024) Resolving the taxonomy of the Polysiphonia scopulorum complex and the Bryocladia lineage (Rhodomelaceae, Rhodophyta). Journal of Phycology 60: 49-72 DOI: 10.1111/jpy.13402 |
|
Hsieh Y.E., Tandon K., Verbruggen H. & Nikoloski Z. (2024) Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches. npj Systems Biology and Applications 10: 54 DOI: 10.1038/s41540-024-00384-y |
|
Wetherbee R., Bringloe T.T., Leliaert F. & Verbruggen H. (2024) Molecular data and culture observations show that the microfilamentous marine alga Uronema marinum is a member of the genus Okellya (Cladophorales, Chlorophyta). Cryptogamie Algologie 45: 31-37 PDF: download |
|
Verbruggen H. & Ballesteros E. (2024) An Atlantic origin for the introduced species Halimeda incrassata. Mediterranean Marine Science 25: 55-57 DOI: 10.12681/mms.35993 |
|
Huisman J.M., Verbruggen H., Hossen R., Rybalka N. & Entwisle T.J. (2024) Morphological and molecular analyses of Vaucheria section Piloboloideae (Xanthophyceae: Vaucheriaceae) indicate alternative species identities for broadly distributed taxa. Phycologia63: 170-178 DOI: 10.1080/00318884.2024.2306656 |
2023
|
Salazar V.W., Shaban B., del Mar Quiroga M., Turnbull R., Tescari E., Marcelino V.R., Verbruggen H. & Le Cao K.A. (2023) Metaphor - A workflow for streamlined assembly and binning of metagenomes. GigaScience 12: giad055 DOI: 10.1093/gigascience/giad055 — Preprint: bioRxiv |
|
Ricci F., Tandon K., Mosshammer M., Cho E.H.J., Blackall L.L., Kühl M. & Verbruggen H. (2023) Fine-scale mapping of physicochemical and microbial landscapes of the coral skeleton. Environmental Microbiology 25: 1505-1521 DOI: 10.1111/1462-2920.16369 — Preprint: ResearchSquare |
|
Tandon K., Pasella M.M., Iha C., Ricci F., Hu J., O'Kelly C.J., Medina M., Kühl M. & Verbruggen H. (2023) Every refuge has its price: Ostreobium as a model for understanding how algae can live in rock and stay in business. Seminars in Cell & Developmental Biology 134: 27-36 DOI: 10.1016/j.semcdb.2022.03.010 |
|
Tandon K., Ricci F., Costa J., Medina M., Kühl M., Blackall L.L. & Verbruggen H. (2023) Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera. GigaScience 12: giac127 DOI: 10.1093/gigascience/giac127 — Preprint: ResearchSquare |
|
Pushpakumara B.L.D.U., Tandon K., Willis A. & Verbruggen H. (2023) Unravelling microalgal-bacterial interactions in aquatic ecosystems through 16S rRNA gene-based co-occurrence networks. Scientific Reports 13: 2743 DOI: 10.1038/s41598-023-27816-9 — Preprint: bioRxiv |
|
Wetherbee R., Bringloe T.T., van de Meene A., Andersen R.A. & Verbruggen H. (2023) Structure and formation of the perforated theca defining the Pelagophyceae (Heterokonta), and three new genera that substantiate the diverse nature of the class. Journal of Phycology 59: 126-151 DOI: 10.1111/jpy.13294 |
|
Diaz-Tapia P., Rodriguez-Bujan I. Maggs C.A. & Verbruggen H. (2023) Phylogenomic analysis of pseudocryptic diversity reveals the new genus Deltalsia (Rhodomelaceae, Rhodophyta). Journal of Phycology 59: 264-276 DOI: 10.1111/jpy.13311 |
|
Diaz-Tapia P., Nelson W.A. & Verbruggen H. (2023) Molecular analysis of turf algae reveal a new species and an undetected introduction in the Pterosiphonieae (Rhodomelaceae, Rhodophyta). Journal of Phycology 59: 603-618 DOI: 10.1111/jpy.13336 |
|
Pushpakumara B.L.D.U., Tandon K., Willis A. & Verbruggen H. (2023) The bacterial microbiome of the coral skeleton algal symbiont Ostreobium shows preferential associations and signatures of phylosymbiosis. Microbial Ecology 86: 2032-2046 DOI: 10.1007/s00248-023-02209-7 — Preprint: bioRxiv |
|
Shaban B., del Mar Quiroga M., Turnbull R., Tescari E., Le Cao K.A. & Verbruggen H. (2023) MetaGenePipe: an automated, portable pipeline for contig-based functional and taxonomic analysis. Journal of Open Source Software 8: 4851 DOI: 10.21105/joss.04851 — Preprint: ResearchSquare |
|
West J.A., Zuccarello G.C., Verbruggen H., Powling J., Miller J. & Loiseaux-de Goer S. (2023) Amoenothamnion planktonicum (Heterothamnieae, Ceramiaceae, Rhodophyta), an annual drift event along sandy beaches of southern Australia and its affinities. Notulae Algarum 271: 1-7 PDF download: Notulae Algarum |
|
Preuss M., Diaz-Tapia P., Verbruggen H. & Zuccarello G.C. (2023) Gene-rich plastid genomes of two parasitic red algal species, Laurencia australis and L. verruciformis (Rhodomelaceae, Ceramiales), and a taxonomic revision of Janczewskia. Journal of Phycology 59: 950-962 DOI: 10.1111/jpy.13373 |
|
Huisman J.M. & Verbruggen H. (2023) A morphological and molecular study supports the recognition of Rhipilia psammophila sp. nov. and Rhipilia baculifera comb. nov. (Halimedaceae, Chlorophyta) from southern Australia. Australian Systematic Botany 36: 427-436 DOI: 10.1071/SB23016 |
2022
|
Uthanumallian K., Iha C., Repetti S.I., Chan C.X., Bhattacharya D., Duchene S. & Verbruggen H. (2022) Tightly constrained genome reduction and relaxation of purifying selection during secondary plastid endosymbiosis. Molecular Biology and Evolution 39: msab295 DOI: 10.1093/molbev/msab295 — Preprint: bioRxiv |
|
Repetti S.I., Iha C., Uthanumallian K., Jackson C.J., Chen Y., Chan C.X. & Verbruggen H. (2022) Nuclear genome of a pedinophyte pinpoints genomic innovation and streamlining in the green algae. New Phytologist 233: 2144-2154 DOI: 10.1111/nph.17926 — Preprint: bioRxiv |
|
Bringloe T.T., Wilkinson D.P., Goldsmit J., Savoie A.M., Filbee-Dexter K., Macgregor K.A., Howland K.L., McKindsey C.W. & Verbruggen H. (2022) Arctic marine forest distribution models showcase potentially severe habitat losses for cryophilic species under climate change. Global Change Biology 28: 3711-3727 DOI: 10.1111/gcb.16142 |
|
Ricci F., Tandon K., Black J.R., Le Cao K.A., Blackall L.L. & Verbruggen H. (2022) Host traits and phylogeny contribute to shaping coral-bacterial symbioses. mSystems 7: e00044-22 DOI: 10.1128/msystems.00044-22 — Preprint: Research Square |
|
Pasella M.M., Lee M.F.E., Marcelino V.R., Willis A. & Verbruggen H. (2022) Ten Ostreobium strains from Great Barrier Reef corals as a resource for algal endolith biology and genomics. Phycologia 61: 452-458 DOI: 10.1080/00318884.2022.2064132 — Preprint: bioRxiv |
|
Bringloe T.T., Fort A., Inaba M., Sulpice R., Ghriofa C.N., Mols-Mortensen A., Filbee-Dexter K., Vieira C., Kawai H., Hanyuda T., Krause-Jensen D., Olesen B., Starko S. & Verbruggen H. (2022) Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia. Molecular Ecology 31: 6473-6488 DOI: 10.1111/mec.16714 |
2021
|
Iha C., Dougan K.E., Varela J.A., Avila V., Jackson C.J., Bogaert K.A., Chen Y., Judd L.M., Wick R., Holt K.E., Pasella M.M., Ricci F., Repetti S.I., Medina M., Marcelino V.R., Chan C.X. & Verbruggen H. (2021) Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium. Current Biology 31: 1393-1402 DOI: 10.1016/j.cub.2021.01.018 — Preprint: bioRxiv |
|
Bringloe T.T., Sauermann R., Krause-Jensen D., Olesen B., Klimova A., Klochkova T.A. & Verbruggen H. (2021) High-througput sequencing of the kelp Alaria (Phaeophyceae) reveals novel epi-endobiotic associations, including a likely phaeophycean parasite. European Journal of Phycology 56: 494-504 DOI: 10.1080/09670262.2021.1882704 |
|
Ricci F., Fordyce A., Leggat W., Blackall L.L., Ainsworth T. & Verbruggen H. (2021) Multiple techniques point to oxygenic phototrophs dominating the Isopora palifera skeletal microbiome. Coral Reefs 40: 275-282 DOI: 10.1007/s00338-021-02068-z |
|
Vieira C., Steen F., D'hondt S., Bafort Q., Tyberghein L., Fernandez-Garcia C., Wysor B., Tronholm A., Mattio L., Payri C., Kawai H., Saunders G., Leliaert F., Verbruggen H. & De Clerck O. (2021) Global biogeography and diversification of a group of brown seaweeds (Phaeophyceae) driven by clade-specific evolutionary processes. Journal of Biogeography 48: 703-715 DOI: 10.1111/jbi.14047 |
|
Wetherbee R., Bringloe T.T., Costa J.F., van de Meene A., Andersen R.A. & Verbruggen H. (2021) New pelagophytes show a novel mode of algal colony development and reveal a perforated theca that may define the class. Journal of Phycology 57: 396-411 DOI: 10.1111/jpy.13074 |
|
Zou X., Verbruggen H., Li T., Zhu J., Chen Z., He W., Bao S. & Sun J. (2021) Identification of polycistronic transcriptional units and non-canonical introns in green algal chloroplasts based on long-read RNA sequencing data. BMC Genomics 22: 298 DOI: 10.1186/s12864-021-07598-y |
|
Preuss M., Verbruggen H., West J. & Zuccarello G.C. (2021) Divergence times and plastid phylogenomics within the intron-rich order Erythropeltales (Compsopogonophyceae, Rhodophyta). Journal of Phycology 57: 1035-1044 DOI: 10.1111/jpy.13159 |
|
Bringloe T.T., Zaparenkov D., Starko S., Grant W., Vieira C., Kawai H., Hanyuda T., Filbee-Dexter K., Klimova A., Klochkova T., Krause-Jensen D., Olesen B. & Verbruggen H. (2021) Whole genome sequencing reveals forgotten lineages and recurrent hybridizations within the kelp genus Alaria (Phaeophyceae). Journal of Phycology 57: 1721-1738 DOI: 10.1111/jpy.13212 |
|
Fang J., Wang H., Chen Y., Liu G., Verbruggen H. & Zhu H. (2021) Chloroplast genome traits correlate with organismal complexity and ecological traits in green algae. Frontiers in Ecology and Evolution 9: 882 DOI: 10.3389/fevo.2021.791166 |
|
Fang J., Liu B., Wang H., Liu G., Verbruggen H. & Zhu H. (2021) Six newly sequenced chloroplast genomes from Trentepohliales: inflated genomes, alternative genetic code and dynamic evolution. Frontiers in Plant Science 12: 2865 DOI: 10.3389/fpls.2021.780054 |
|
Tonicelli G., Croce M.E., Diaz-Tapia P., Fredericq S., Freshwater D.W., Gauna M.C., Parodi E.R., Verbruggen H. & Hommersand M. (2021) Meridionella gen. nov., a new genus of Cystocloniaceae (Gigartinales, Rhodophyta) from the southern hemisphere including M. obtusangula comb. nov. and M. antarctica sp. nov. Journal of Phycology 57: 797-816 DOI: 10.1111/jpy.13127 |
2020
|
del Cortona A., Jackson C.J., Bucchini F., Van Bel M., D'Hondt S., Skaloud P., Delwiche C.F., Knoll A.H., Raven J.A., Verbruggen H., Vandepoele K., De Clerck O. & Leliaert F. (2020) Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences of the USA 117: 2551-2559 DOI: 10.1073/pnas.1910060117 — preprint: 10.1101/668475 |
|
Bringloe T.T., Verbruggen H. & Saunders G.W. (2020) Unique biodiversity in Arctic marine forests is shaped by diverse recolonization pathways and far northern glacial refugia. Proceedings of the National Academy of Sciences of the USA 117: 22590-22596 DOI: 10.1073/pnas.2002753117 — preprint: bioRxiv |
|
Bringloe T.T., Starko S., Wade R.M., Vieira C., Kawai H., De Clerck O., Cock J.M., Coelho S.M., Destombe C., Valero M., Neiva J., Pearson G.A., Faugeron S., Serrao E.A. & Verbruggen H. (2020) Phylogeny and evolution of the brown algae. Critical Reviews in Plant Sciences 39: 281-321 DOI: 10.1080/07352689.2020.1787679 |
|
Repetti S.I., Jackson C.J., Judd L.M., Wick R.R., Holt K.E. & Verbruggen H. (2020) The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns. PeerJ 8: e8273 DOI: 10.7717/peerj.8273 |
|
Goes-Neto A., Marcelino V.R., Verbruggen H., Ferreira da Silva F. & Badotti F. (2020) Fungal diversity of coral skeletons in the southwestern Pacific using 18S rDNA metabarcoding. Coral Reefs 39: 229-238 DOI: 10.1007/s00338-019-01880-y |
|
Diaz-Tapia P., Ly M. & Verbruggen H. (2020) Extensive cryptic diversity in the widely distributed Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta): molecular species delimitation and morphometric analyses. Molecular Phylogenetics and Evolution 152: 106909 DOI: 10.1016/j.ympev.2020.106909 |
|
Preuss M., Verbruggen H. & Zuccarello G.C. (2020) The organelle genomes in the photosynthetic red algal parasite Pterocladiophila hemisphaerica have elevated substitution rates and extreme gene loss in the plastid genome. Journal of Phycology 56: 1006-1018 DOI: 10.1111/jpy.12996 |
|
Charon J., Marcelino V.R., Wetherbee R., Verbruggen H. & Holmes E.C. (2020) Metatranscriptomic identification of diverse and divergent RNA viruses associated with green and chlorarachniophyte algae. Viruses 12: 1180 DOI: 10.3390/v12101180 — Preprint: bioRxiv |
|
Graf L., Yang E.C., Han K.Y., Kupper F., Benes K.M., Oyadomari J., Herbert R.J.H., Verbruggen H., Wetherbee R., Andersen R.A. & Yoon H.S. Multigene phylogeny, morphological observation and re-examination of the literature lead to the description of the Phaeosacciophyceae classis nova and four new species of the Heterokontophyta SI clade. Protist 171: 125781 DOI: 10.1016/j.protis.2020.125781 |
|
Rindi F., Pasella M.M., Lee M-F.E. & Verbruggen H. (2020) Phylogeography of the Mediterranean green seaweed Halimeda tuna. Journal of Phycology 56: 1109-1113 DOI: 10.1111/jpy.13006 |
|
Pineiro-Corbeira C., Verbruggen H. & Diaz-Tapia P. (2020) Molecular survey of the red algal family Rhodomelaceae (Ceramiales, Rhodophyta) in Australia reveals new introduced species. Journal of Applied Phycology 32: 2535-2547 DOI: 10.1007/s10811-019-01932-4 |
|
Schneider C.W., Lam D.W. & Verbruggen H. (2020) DNA sequencing and anatomy demonstrate that Pacific Codium simulans is a genetically variable species found in the floras of Bermuda and Florida. Phycological Research 68: 98-102 DOI: 10.1111/pre.12396 |
|
Lagourgue L., Verbruggen H., Ampou E.E. & Payri C.E. (2020) One hundred years later, resurrection of Tydemania gardineri (Udoteaceae, Chlorophyta) based on molecular and morphological data. European Journal of Phycology 55: 89-99 DOI: 10.1080/09670262.2019.1654618 |
|
Diaz-Tapia P., Maggs C.A., Nelson W., Macaya E.C. & Verbruggen H. (2020) Reassessment of the genus Lophurella (Rhodomelaceae, Rhodophyta) from Australia and New Zealand reveals four cryptic species. European Journal of Phycology 55: 113-128 DOI: 10.1080/09670262.2019.1659419 |
|
Huisman J.M. & Verbruggen H. (2020) Pseudoderbesia eckloniae, sp. nov. (Bryopsidaceae, Ulvophyceae) from Western Australia. Cryptogamie Algologie 41: 19-23 DOI: 10.5252/cryptogamie-algologie2020v41a3 |
|
Dumilag R.V., Dumago F.S., Cabudoy R.K.R., Peralta M.C.E., Li C.C., Gamus G.C.V., Romero R.G.T., Yap S.L., Roleda M.Y., Geraldino P.J.L., Verbruggen H., Leliaert F., Draisma S.G.A., Liao L.M. & Kraft G.T. (2020) The Ulvophyceae (Chlorophyta) of eastern Sorsogon, Philippines, including Halimeda magnicuneata sp. nov. (Bryopsidales). Botanica Marina 63: 439-453 DOI: 10.1515/bot-2020-0017 |
2019
|
Ricci F., Marcelino V.R., Blackall L.L., Kühl M., Medina M. & Verbruggen H. (2019) Beneath the surface: community assembly and functions of the coral skeleton microbiome. Microbiome 7: 159 DOI: 10.1186/s40168-019-0762-y |
|
Wetherbee R., Jackson C.J., Repetti S.I., Clementson L.A., Costa J.F., van de Meene A., Crawford S. & Verbruggen H. (2019) The golden paradox – a new heterokont lineage with chloroplasts surrounded by two membranes. Journal of Phycology 55: 257-278 DOI: 10.1111/jpy.12822 |
|
Cremen M.C.M., Leliaert F., West J., Lam D.W., Shimada S., Lopez-Bautista J. & Verbruggen H. (2019) Re-assessment of the classification of Bryopsidales (Chlorophyta) based on chloroplast phylogenomic analyses. Molecular Phylogenetics and Evolution 130: 397-405 DOI: 10.1016/j.ympev.2018.09.009 |
|
Bribiesca-Contreras G., Pineda-Enriquez T., Marquez-Borras F., Solis-Marin F.A., Verbruggen H., Hugall A.F. & O'Hara T. (2019) Dark offshoot: Phylogenomic data sheds light on the evolutionary history of a new species of cave brittle star. Molecular Phylogenetics and Evolution 136: 151-163 DOI: 10.1016/j.ympev.2019.04.014 |
|
Diaz-Tapia P., Pasella M.M., Verbruggen H. & Maggs C.A. (2019) Morphological evolution and classification of the red algal order Ceramiales inferred using plastid phylogenomics. Molecular Phylogenetics and Evolution 137: 76-85 DOI: 10.1016/j.ympev.2019.04.022 |
|
Evans J.R., St. Amour N., Verbruggen H., Salomaki E.D. & Vis M.L. (2019) Chloroplast and mitochondrial genomes of Balbiania investiens (Balbianiales, Nemaliophycidae). Phycologia 58: 310-318 DOI: 10.1080/00318884.2019.1573349 |
|
Pasella M.M., Verbruggen H., Nelson W.A. & Diaz-Tapia P. (2019) The phylogenetic position of the morphologically unusual Pleurostichidium falkenbergii (Rhodomelaceae, Rhodophyta) based on plastid phylogenomics. Phycologia 58: 319-325 DOI: 10.1080/00318884.2019.1574462 |
|
Bribiesca-Contreras G., Verbruggen H., Hugall A.F. & O'Hara T. (2019) Global biogeographic structuring of tropical shallow-water brittle stars. Journal of Biogeography 46: 1287-1299 DOI: 10.1111/jbi.13620 |
|
Wetherbee R., Marcelino V.R., Costa J.F., Grant B., Crawford S., Waller R.F., Andersen R.A., Berry D., McFadden G.I. & Verbruggen H. (2019) A new marine prasinophyte genus alternates between a flagellate and a dominant benthic stage with microrhizoids for adhesion. Journal of Phycology 55: 1210-1225 DOI: 10.1111/jpy.12909 |
2018
|
Diaz-Tapia P., Maggs C.A., Macaya E.C. & Verbruggen H. (2018) Widely distributed red algae often represent hidden introductions, complexes of cryptic species or species with strong phylogeographic structure. Journal of Phycology 54: 829-839 DOI: 10.1111/jpy.12778 |
|
Iha C., Grassa C.J., Lyra G.M., Davis C.C., Verbruggen H. & Oliveira M.C. (2018) Organellar genomics: a useful tool to study evolutionary relationships and molecular evolution in Gracilariaceae (Rhodophyta). Journal of Phycology 54: 775-787 DOI: 10.1111/jpy.12765 |
|
Croce M.E., Diaz-Tapia P. & Verbruggen H. (2018) Molecular systematics of the siphonous green algal genus Codium in eastern Victoria, Australia. Cryptogamie Algologie 39:391-407 DOI: 10.7872/crya/v39.iss4.2018.39 |
|
Leliaert F., Payo D.A., Gurgel C.F.D., Schils T., Draisma S.G.A., Saunders G.W., Kamiya M., Sherwood A.R., Lin S.M., Huisman J.M., Le Gall L., Anderson R.J., Bolton J.J., Mattio L., Zubia M., Payri C., Spokes T., Johnston E.T., Vieira C., Coppejans E., D'hondt S., Verbruggen H. & De Clerck O. (2018) Patterns and drivers of species diversity in the Indo-Pacific red seaweed Portieria. Journal of Biogeography 10: 2299-2313 DOI: 10.1111/jbi.13410 |
|
Yates K.L., Bouchet P.J., Caley M.J., Mengersen K., Randin C.F., Parnell S., Fielding A.H., Bamford A.J., Ban S., Barbosa A.M., Dormann C.F., Elith J., Embling C.B., Ervin G.N., Fisher R., Gould S., Graf R.F., Gregr E.J., Halpin P.N., Heikkinen R.K., Heinanen S., Jones A.R., Krishnakumar P.K., Lauria V., Lozano-Montes H., Mannocci L., Mellin C., Mesgaran M.B., Moreno-Amat E., Mormede S. Novaczek E., Oppel S., Ortuno Crespo G., Peterson A.T., Rapacciuolo G., Roberts J.J., Ross R.E. Scales K.L., Schoeman D., Snelgrove P., Sundblad G., Thuiller W., Torres L.G., Verbruggen H., Wang L., Wenger S., Whittingham M.J., Zharikov Y., Zurell D. & Sequeira A.M.M. (2018) Outstanding challenges in the transferability of ecological models. Trends in Ecology & Evolution 33: 790-802 DOI: 10.1016/j.tree.2018.08.001 |
|
Diaz-Tapia P., Pasella M.M. & Verbruggen H. (2018) Molecular analyses resolve the phylogenetic position of Polysiphonia adamsiae (Rhodomelaceae, Rhodophyta) and reveal a strong phylogeographic structure in Australia. Phycologia 57: 593-600 DOI: 10.2216/18-36.1 |
|
Oliveira M.C., Repetti S.I., Iha C., Jackson C.J., Diaz-Tapia P., Magalhaes K., Cassano V., Costa J.F., Cremen M.C.M., Marcelino V.R. & Verbruggen H. (2018) High-throughput sequencing for algal systematics. European Journal of Phycology 53: 256-272 DOI: 10.1080/09670262.2018.1441446 |
|
Cremen M.C.M., Leliaert F., Marcelino V.R. & Verbruggen H. (2018) Large diversity of nonstandard genes and dynamic evolution of chloroplast genomes in siphonous green algae (Bryopsidales, Chlorophyta). Genome Biology and Evolution 10: 1048-1061 DOI: 10.1093/gbe/evy063 |
|
Paiano M.O., Del Cortona A., Costa J.F., Liu S.L., Verbruggen H., De Clerck O. & Necchi Jr O. (2018) Complete mitochondrial genomes of six species of the freshwater red algal order Batrachospermales (Rhodophyta). Mitochondrial DNA Part B - Resources 3: 607-610 DOI: 10.1080/23802359.2018.1473734 |
|
Assis J., Tyberghein L., Bosch S., Verbruggen H., Serrao E.A. & De Clerck O. (2018) Bio-ORACLE v2.0: Extending marine data layers for bioclimatic modelling. Global Ecology and Biogeography 27: 277-284. DOI: 10.1111/geb.12693 |
|
Marcelino V.R., van Oppen M.J.H. & Verbruggen H. (2018) Highly structured prokaryote communities exist within the skeleton of coral colonies. ISME Journal 12: 300-303 DOI: 10.1038/ismej.2017.164 |
|
Jackson C., Knoll A.H., Chan C.X. & Verbruggen H. (2018) Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids. Scientific Reports 8: 1523 DOI: 10.1038/s41598-017-18805-w |
|
Paiano M.O., Del Cortona A., Costa J.F., Liu S.L., Verbruggen H., De Clerck O. & Necchi O. (2018) Organization of plastid genomes in the freshwater red algal order Batrachospermales (Rhodophyta). Journal of Phycology 54: 25-33 DOI: 10.1111/jpy.12602 |
|
Hoffman R., Wynne M.J., Schils T., Lopez-Bautista J. & Verbruggen H. (2018) Codium pulvinatum (Bryopsidales, Chlorophyta), a new species from the Arabian Sea, recently introduced into the Mediterranean Sea. Phycologia 57: 79-89 DOI: 10.2216/17-74.1 |
2017
|
del Cortona A., Leliaert F., Bogaert K.A., Turmel M., Boedeker C., Janouskovec J., Lopez-Bautista J.M., Verbruggen H., Vanepoele K., De Clerck O. (2017) The plastid genome in Cladophorales green algae is encoded by hairpin plasmids. Current Biology 27: 3771-3782 DOI: 10.1016/j.cub.2017.11.004 — preprint: 10.1101/145037 |
|
Marcelino V.R., Morrow K.M., van Oppen M.J.H., Bourne D.G. & Verbruggen H. (2017) Diversity and stability of coral endolithic microbial communities at a naturally high pCO2 reef. Molecular Ecology 26: 5334-5357 DOI: 10.1111/mec.14268 |
|
Bribiesca-Contreras G., Verbruggen H., Hugall A.F. & O'Hara T.D. (2017) The importance of offshore origination revealed through ophiuroid phylogenomics. Proceedings of the Royal Society B: Biological Sciences 284: 20170160 DOI: 10.1098/rspb.2017.0160 |
|
Marcelino V.R. & Verbruggen H. (2017) Reference datasets of tufA and UPA markers to identify algae in metabarcoding surveys. Data Brief 11: 273-276 DOI: 10.1016/j.dib.2017.02.013 |
|
Diaz-Tapia P., Maggs C.A., West J.A. & Verbruggen H. (2017) Analysis of chloroplast genomes and a supermatrix inform reclassification of the Rhodomelaceae (Rhodophyta). Journal of Phycology 53: 920-937 DOI: 10.1111/jpy.12553 |
|
Diaz-Tapia P., Barbara I., Cremades J., Verbruggen H. & Maggs C.A. (2017) Three new cryptogenic species in the tribe Polysiphonieae (Rhodomelaceae, Rhodophyta). Phycologia 56: 605-623 DOI: 10.2216/17-17.1 |
|
Verbruggen H., Marcelino V.R., Guiry M.D., Cremen M.C.M. & Jackson C. (2017) Phylogenetic position of the coral symbiont Ostreobium (Ulvophyceae) inferred from chloroplast genome data. Journal of Phycology 53: 790-803 DOI: 10.1111/jpy.12540 |
|
Steen F., Aragay J., Zuljevic A., Verbruggen H., Mancuso F.P., Bunker F., Vitales D., Gomez Garreta A. & De Clerck O. (2017) Tracing the introduction history of the brown seaweed Dictyota cyanoloma (Phaeophyceae, Dictyotales) in Europe. European Journal of Phycology 52: 31-42 DOI: 10.1080/09670262.2016.1212998 |
|
Diaz-Tapia P., McIvor L., Freshwater D.W., Verbruggen H., Wynne M.J. & Maggs C.A (2017) The genera Melanothamnus Bornet & Falkenberg and Vertebrata S.F. Gray constitute well-defined clades of the red algal tribe Polysiphonieae (Rhodomelaceae, Ceramiales). European Journal of Phycology 52: 1-30 DOI: 10.1080/09670262.2016.1256436 |
|
Ximenes C.F., Cassano V., Oliveira-Carvalho M.F., Bandeira-Pedrosa M.E., Gurgel C.F.D., Verbruggen H. & Barreto-Pereira S.M. (2017) Systematics of the genus Halimeda (Bryopsidales, Chlorophyta) in Brazil including the description of Halimeda jolyana sp. nov. Phycologia 56: 369-381 DOI: 10.2216/16-77.1 |
|
Verbruggen H., Brookes M.J. & Costa J.F. (2017) DNA barcodes and morphometric data indicate that Codium fragile may consist of two species (Bryopsidales, Chlorophyta). Phycologia 56: 54-62 DOI: 10.2216/16-54.1 |
2016
|
Rindi F. & Verbruggen H. (2016) Taxonomic reshuffling of the Cladophoraceae. Journal of Phycology 52: 901-904 DOI: 10.1111/jpy.12459 |
|
Costa J.F., Lin S.M., Macaya E.C., Fernandez-Garcia C. & Verbruggen H. (2016) Chloroplast genomes as a tool to resolve red algal phylogenies: a case study in the Nemaliales. BMC Evolutionary Biology 16: 205 DOI: 10.1186/s12862-016-0772-3 |
|
Alos J., Tomas F., Terrados J., Verbruggen H. & Ballesteros E. (2016) Fast-spreading green beds of recently introduced Halimeda incrassata (Bryopsidales, Chlorophyta) invade Mallorca Island (NW Mediterranean Sea). Molecular Ecology Progress Series 558: 153-158 DOI: 10.3354/meps11869 |
|
Marcelino V.R., Cremen M.C.M., Jackson C.J., Larkum A. & Verbruggen H. (2016) Evolutionary dynamics of chloroplast genomes in low light: a case study of the endolithic green alga Ostreobium quekettii. Genome Biology and Evolution 8: 2939-2951 DOI: 10.1093/gbe/evw206 — preprint: 10.1101/049833 |
|
Marcelino V.R. & Verbruggen H. (2016) Multi-marker metabarcoding of coral skeletons reveals a rich microbiome and diverse evolutionary origins of endolithic algae. Scientific Reports 6: 31508 DOI: 10.1038/srep31508 |
|
Wetherbee R. & Verbruggen H. (2016) Kraftionema allantoideum, a new genus and family of Ulotrichales (Chlorophyta) adapted for survival in high intertidal pools. Journal of Phycology 52: 704-715 DOI: 10.1111/jpy.12447 |
|
West J.A., Zuccarello G.C., Loiseaux de Goer S., Stavrias L.A. & Verbruggen H. (2016) Rhodenigma contortum, an obscure new genus and species of Rhodogorgonales (Rhodophyta) from Western Australia. Journal of Phycology 52: 397-403 DOI: 10.1111/jpy.12402 |
|
Cremen M.C.M., Huisman J.M., Marcelino V.R. & Verbruggen H. (2016) Taxonomic revision of Halimeda in southwestern Australia. Australian Systematic Botany 29: 41-54 DOI: 10.1071/SB15043 |
|
Fernandez-Garcia C., Wysor B., Riosmena-Rodriguez R., Pena-Salamanca E. & Verbruggen H. (2016) DNA-assisted identification of Caulerpa (Caulerpaceae, Chlorophyta) reduces species richness estimates for the Eastern Tropical Pacific. Phytotaxa 252: 185-204 DOI: 10.11646/phytotaxa.252.3.2 |
|
Lam D.W., Verbruggen H., Saunders G.W., Vis M.L. (2016) Multigene phylogeny of the red algal subclass Nemaliophycidae. Molecular Phylogenetics and Evolution 94: 730-736 DOI: 10.1016/j.ympev.2015.10.015 |
Older work
For older work, see Google Scholar.