Resources for the Ostreobium SAG 6.99 nuclear genome
Annotated scaffolds: Sequences in fasta format (link) with gene models in gff3 format (link). For those preferring Genbank entries, those are here
Raw DNA reads: Nanopore R9.5 (ERR4683117, ERR4683118), Illumina HiSeq (ERR4332232, ERR4332233)
Protein-coding sequences: CDS sequences in fasta (link), as amino-acid sequences (link) and table of Uniprot and KEGG functional annotations (link)
RNAseq: Raw reads from single pooled library from multiple growth conditions (link)
Organelles: Mitochondrion (link) and chloroplast (link)
Sources: Nuclear genome (10.1016/j.cub.2021.01.018), mitochondrion & RNAseq (10.7717/peerj.8273), chloroplast (10.1093/gbe/evw206)
Ostreobium culture strains and molecular data
Strain |
Collection |
Chloroplast |
Mitochondrion |
Nuclear |
DNA barcodes |
Origin |
Reference |
| SAG 6.99 | SAG 6.99 | LT593849 | MN514984 | CAJHUC01 | Philippines, epiphyte on red alga | West & Calumpong 1990 | |
| SAG 7.99 | SAG 7.99 | Point Lonsdale, Australia | |||||
| VRM605 | ANACC CS-1379 | OK189523 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | |||
| VRM623 | ANACC CS-1381 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | ||||
| VRM627 | ANACC CS-1382 | OK189525 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | |||
| VRM633 | ANACC CS-1383 | OK189526 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | |||
| VRM638 | ANACC CS-1384 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | ||||
| VRM642 | ANACC CS-1385 | OK189527 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | |||
| VRM644 | ANACC CS-1386 | OK189528 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | |||
| VRM646 | ANACC CS-1387 | OK189529 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | |||
| VRM647 | NA | OK189530 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | |||
| VRM650 | ANACC CS-1388 | OK189531 | Great Barrier Reef, coral skeleton | Pasella et al. 2021 | |||
| 010 | MNHN-ALCP-2019-873.3 | rbcL | Aquarium, coral skeleton | Massé et al. 2020 | |||
| 017 | MNHN-ALCP-2019-873.4 | rbcL | Aquarium, coral skeleton | Massé et al. 2020 | |||
| 018B | MNHN-ALCP-2019-873.6 | rbcL | Aquarium, coral skeleton | Massé et al. 2020 | |||
| 019 | MNHN-ALCP-2019-873.8 | rbcL | Aquarium, coral skeleton | Massé et al. 2020 | |||
| 05 | MNHN-ALCP-2019-873.1 | rbcL | Aquarium, coral skeleton | Massé et al. 2020 | |||
| 018C | MNHN-ALCP-2019-873.7 | rbcL | Aquarium, coral skeleton | Massé et al. 2020 | |||
| 022 | NA | rbcL | Aquarium, coral skeleton | Massé et al. 2020 | |||
| 018A | MNHN-ALCP-2019-873.5 | rbcL | Aquarium, coral skeleton | Massé et al. 2020 | |||
| 06 | MNHN-ALCP-2019-873.2 | rbcL | Aquarium, coral skeleton | Massé et al. 2020 |